selected publications
- Geospatially-resolved public-health surveillance via wastewater sequencing. medRxiv : the preprint server for health sciences. 2023 Article GET IT
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Collection of Biospecimens from the Inspiration4 Mission Establishes the Standards for the Space Omics and Medical Atlas (SOMA).
bioRxiv : the preprint server for biology.
2023
Article
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Times cited: 359 - A modular metagenomics analysis system for integrated multi-step data exploration. bioRxiv : the preprint server for biology. 2023 Article GET IT
- Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems. mSystems. 2023 Academic Article GET IT
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Prioritization of COVID-19 risk factors in July 2020 and February 2021 in the UK.
Communications medicine.
2023
Academic Article
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Times cited: 139 - Capacity of a Microbial Synbiotic To Rescue the In Vitro Metabolic Activity of the Gut Microbiome following Perturbation with Alcohol or Antibiotics. Applied and environmental microbiology. 2023 Academic Article GET IT
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Microbiome and metagenomic analysis of Lake Hillier Australia reveals pigment-rich polyextremophiles and wide-ranging metabolic adaptations.
Environmental microbiome.
2022
Academic Article
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Times cited: 71 -
Multidrug-resistant Acinetobacter pittii is adapting to and exhibiting potential succession aboard the International Space Station.
Microbiome.
2022
Academic Article
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Times cited: 2 -
Reproducible and opposing gut microbiome signatures distinguish autoimmune diseases and cancers: a systematic review and meta-analysis.
Microbiome.
2022
Review
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Times cited: 2 - The Maleth program: Malta's first space mission discoveries on the microbiome of diabetic foot ulcers. Heliyon. 2022 Academic Article GET IT
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Functional response to a microbial synbiotic in the gastrointestinal system of children: a randomized clinical trial.
Pediatric research.
2022
Academic Article
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Times cited: 1 - Supervised Machine Learning Enables Geospatial Microbial Provenance. Genes. 2022 Academic Article GET IT
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A history of the MetaSUB consortium: Tracking urban microbes around the globe.
iScience.
2022
Article
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Times cited: 24 -
Unlocking capacities of genomics for the COVID-19 response and future pandemics.
Nature methods.
2022
Academic Article
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Times cited: 13 -
Systematically assessing microbiome-disease associations identifies drivers of inconsistency in metagenomic research.
PLoS biology.
2022
Academic Article
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Times cited: 5 -
Using Cartesian Doubt To Build a Sequencing-Based View of Microbiology.
mSystems.
2021
Academic Article
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Times cited: 297 -
Leveraging vibration of effects analysis for robust discovery in observational biomedical data science.
PLoS biology.
2021
Academic Article
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Times cited: 5 -
Gene-level metagenomic architectures across diseases yield high-resolution microbiome diagnostic indicators.
Nature communications.
2021
Academic Article
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Times cited: 19 -
Reconstruction of ancient microbial genomes from the human gut.
Nature.
2021
Academic Article
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Times cited: 74 -
A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type.
PLoS computational biology.
2020
Academic Article
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Times cited: 8 -
The Landscape of Genetic Content in the Gut and Oral Human Microbiome.
Cell host & microbe.
2019
Review
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Times cited: 140 -
Meta-omics analysis of elite athletes identifies a performance-enhancing microbe that functions via lactate metabolism.
Nature medicine.
2019
Academic Article
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Times cited: 362 -
Author Correction: Repurposing large health insurance claims data to estimate genetic and environmental contributions in 560 phenotypes.
Nature genetics.
2019
Academic Article
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Times cited: 1 -
Repurposing large health insurance claims data to estimate genetic and environmental contributions in 560 phenotypes.
Nature genetics.
2019
Academic Article
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Times cited: 35 -
Removal of a Membrane Anchor Reveals the Opposing Regulatory Functions of Vibrio cholerae Glucose-Specific Enzyme IIA in Biofilms and the Mammalian Intestine.
mBio.
2018
Academic Article
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Times cited: 6 -
Aether: leveraging linear programming for optimal cloud computing in genomics.
Bioinformatics (Oxford, England).
2018
Academic Article
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Times cited: 5