selected publications
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Portability of natural language processing methods to detect suicidality from clinical text in US and UK electronic health records.
Journal of affective disorders reports.
2022
Academic Article
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Times cited: 1 -
Design and validation of a FHIR-based EHR-driven phenotyping toolbox.
Journal of the American Medical Informatics Association : JAMIA.
2022
Academic Article
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Times cited: 2 -
Prolonged Unconsciousness is Common in COVID-19 and Associated with Hypoxemia.
Annals of neurology.
2022
Academic Article
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Times cited: 12 -
An architecture for research computing in health to support clinical and translational investigators with electronic patient data.
Journal of the American Medical Informatics Association : JAMIA.
2022
Academic Article
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Times cited: 3 -
Hyperglycemia in acute COVID-19 is characterized by insulin resistance and adipose tissue infectivity by SARS-CoV-2.
Cell metabolism.
2021
Article
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Times cited: 11 -
Comparing automated vs. manual data collection for COVID-specific medications from electronic health records.
International journal of medical informatics.
2021
Academic Article
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Times cited: 629 -
Automated Extraction of Tumor Staging and Diagnosis Information From Surgical Pathology Reports.
JCO clinical cancer informatics.
2021
Academic Article
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Times cited: 2 -
Hyperglycemia in acute COVID-19 is characterized by insulin resistance and adipose tissue infectivity by SARS-CoV-2.
Cell metabolism.
2021
Academic Article
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Times cited: 86 - Leveraging Deep Representations of Radiology Reports in Survival Analysis for Predicting Heart Failure Patient Mortality. Proceedings of the conference. Association for Computational Linguistics. North American Chapter. Meeting. 2021 Academic Article GET IT
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Critical carE Database for Advanced Research (CEDAR): An automated method to support intensive care units with electronic health record data.
Journal of biomedical informatics.
2021
Academic Article
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Times cited: 14 -
Closed-loop vagal nerve stimulation for intractable epilepsy: A single-center experience.
Seizure.
2021
Academic Article
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Times cited: 2 - Hyperglycemia in Acute COVID-19 is Characterized by Adipose Tissue Dysfunction and Insulin Resistance. medRxiv : the preprint server for health sciences. 2021 Article GET IT
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Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.
Nature communications.
2021
Academic Article
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Times cited: 67 -
Using weak supervision and deep learning to classify clinical notes for identification of current suicidal ideation.
Journal of psychiatric research.
2021
Academic Article
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Times cited: 18 -
A Method to Improve Availability and Quality of Patient Race Data in an Electronic Health Record System.
Applied clinical informatics.
2020
Academic Article
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Times cited: 7 - Using electronic health records for population health sciences: a case study to evaluate the associations between changes in left ventricular ejection fraction and the built environment. JAMIA open. 2020 Academic Article GET IT
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Utilizing electronic health data and machine learning for the prediction of 30-day unplanned readmission or all-cause mortality in heart failure.
Cardiovascular digital health journal.
2020
Academic Article
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Times cited: 5 -
Comparing a novel machine learning method to the Friedewald formula and Martin-Hopkins equation for low-density lipoprotein estimation.
PloS one.
2020
Academic Article
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Times cited: 15 -
Development and external validation of a prediction risk model for short-term mortality among hospitalized U.S. COVID-19 patients: A proposal for the COVID-AID risk tool.
PloS one.
2020
Academic Article
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Times cited: 27 -
Extracting and classifying diagnosis dates from clinical notes: A case study.
Journal of biomedical informatics.
2020
Academic Article
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Times cited: 6 -
Clinical Screening for COVID-19 in Asymptomatic Patients With Cancer.
JAMA network open.
2020
Academic Article
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Times cited: 19 -
Extraction of radiographic findings from unstructured thoracoabdominal computed tomography reports using convolutional neural network based natural language processing.
PloS one.
2020
Academic Article
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Times cited: 8 -
Assessing the impact of social determinants of health on predictive models for potentially avoidable 30-day readmission or death.
PloS one.
2020
Academic Article
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Times cited: 25 -
Toward cross-platform electronic health record-driven phenotyping using Clinical Quality Language.
Learning health systems.
2020
Academic Article
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Times cited: 9 - Characterizing Basic and Complex Usage of i2b2 at an Academic Medical Center. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2020 Academic Article GET IT
- Mapping Local Biospecimen Records to the OMOP Common Data Model. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2020 Academic Article GET IT
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Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation.
Journal of the American Medical Informatics Association : JAMIA.
2019
Academic Article
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Times cited: 29 - A Method for Integrating Healthcare Provider Organization and Research Sponsor Systems and Workflows to Support Large-Scale Studies. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2019 Academic Article GET IT
- Evaluation of a REDCap-based Workflow for Supporting Federal Guidance for Electronic Informed Consent. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2019 Academic Article GET IT
- Implementation of Informatics to Support the NIH All of Us Research Program in a Healthcare Provider Organization. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2019 Academic Article GET IT
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Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2018
Academic Article
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Times cited: 11 -
Lessons Learned in the Development of a Computable Phenotype for Response in Myeloproliferative Neoplasms.
IEEE International Conference on Healthcare Informatics. IEEE International Conference on Healthcare Informatics.
2018
Academic Article
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Times cited: 2 -
A scalable method for supporting multiple patient cohort discovery projects using i2b2.
Journal of biomedical informatics.
2018
Academic Article
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Times cited: 2 -
Evaluating Generalizability of a Biospecimen Informatics Approach: Support for Local Requirements and Best Practices.
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.
2018
Academic Article
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Times cited: 51 -
Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers.
AMIA ... Annual Symposium proceedings. AMIA Symposium.
2018
Academic Article
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Times cited: 36 - Generalizable Middleware to Support Use of REDCap Dynamic Data Pull for Integrating Clinical and Research Data. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2017 Academic Article GET IT