selected publications
- Evaluation of Immunocompetence and Biomarkers of Tolerance in Chimeric and Immunosuppression-free Kidney Allograft Recipients. Transplantation. 2023 Academic Article GET IT
- Case Commentary: Unlocking the Potential of Bacteriophage to Prevent Recurrent Urinary Tract Infections after Kidney Transplantation. Antimicrobial agents and chemotherapy. 2023 Academic Article GET IT
- KIBRA upregulation increases susceptibility to podocyte injury and glomerular disease progression. JCI insight. 2023 Academic Article GET IT
- A Distinct Nasal Microbiota Signature in Peritoneal Dialysis Patients. medRxiv : the preprint server for health sciences. 2023 Article GET IT
- Characteristics of natural immunity to SARS-CoV-2 over time in wait-listed dialysis patients and recent kidney transplant recipients. Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association. 2022 Letter GET IT
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A metagenomic DNA sequencing assay that is robust against environmental DNA contamination.
Nature communications.
2022
Academic Article
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Times cited: 5 -
Detection of infiltrating fibroblasts by single-cell transcriptomics in human kidney allografts.
PloS one.
2022
Academic Article
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Times cited: 4 -
Serum MicroRNA Transcriptomics and Acute Rejection or Recurrent Hepatitis C Virus in Human Liver Allograft Recipients: A Pilot Study.
Transplantation.
2022
Academic Article
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Times cited: 6 -
A Community-Based Education Program for Overactive Bladder in a Predominantly Minority Older Female Population: A Pilot Study.
Urologia internationalis.
2022
Academic Article
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Times cited: 1 -
The gut, vaginal, and urine microbiome in overactive bladder: a systematic review.
International urogynecology journal.
2022
Academic Article
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Times cited: 3 -
Metagenomics combined with activity-based proteomics point to gut bacterial enzymes that reactivate mycophenolate.
Gut microbes.
2022
Academic Article
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Times cited: 4 -
Measurement Biases Distort Cell-Free DNA Fragmentation Profiles and Define the Sensitivity of Metagenomic Cell-Free DNA Sequencing Assays.
Clinical chemistry.
2021
Academic Article
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Times cited: 3 -
New insights into the microbiome in kidney transplantation.
Current opinion in organ transplantation.
2021
Review
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Times cited: 3 -
Deep significance clustering: a novel approach for identifying risk-stratified and predictive patient subgroups.
Journal of the American Medical Informatics Association : JAMIA.
2021
Academic Article
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Times cited: 3 - A metagenomic DNA sequencing assay that is robust against environmental DNA contamination. bioRxiv : the preprint server for biology. 2021 Article GET IT
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Peritoneal Effluent Cell-Free DNA Sequencing in Peritoneal Dialysis Patients With and Without Peritonitis.
Kidney medicine.
2021
Academic Article
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Times cited: 2 -
Kidney Allograft Function Is a Confounder of Urine Metabolite Profiles in Kidney Allograft Recipients.
Metabolites.
2021
Academic Article
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Times cited: 974 -
FOXP3 mRNA Profile Prognostic of Acute T Cell-mediated Rejection and Human Kidney Allograft Survival.
Transplantation.
2021
Academic Article
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Times cited: 7 - Deep sequencing of DNA from urine of kidney allograft recipients to estimate donor/recipient-specific DNA fractions. PloS one. 2021 Academic Article GET IT
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Gut microbiota profiles and fecal beta-glucuronidase activity in kidney transplant recipients with and without post-transplant diarrhea.
Clinical transplantation.
2021
Academic Article
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Times cited: 10 -
The Potential Role of the Gut Microbiota in Kidney Transplantation.
Kidney360.
2021
Academic Article
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Times cited: 53 -
Colonization with Gastrointestinal Pathogens Prior to Hematopoietic Cell Transplantation and Associated Clinical Implications.
Transplantation and cellular therapy.
2021
Academic Article
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Times cited: 2 -
Validation of a noninvasive prognostic signature for allograft failure following BK virus associated nephropathy.
Clinical transplantation.
2021
Academic Article
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Times cited: 2 -
Gut commensal microbiota and decreased risk for Enterobacteriaceae bacteriuria and urinary tract infection.
Gut microbes.
2020
Academic Article
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Times cited: 31 -
COVID-19 outcomes in patients waitlisted for kidney transplantation and kidney transplant recipients.
American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.
2020
Academic Article
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Times cited: 56 -
Characteristics of Acute Kidney Injury in Hospitalized COVID-19 Patients in an Urban Academic Medical Center.
Clinical journal of the American Society of Nephrology : CJASN.
2020
Letter
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Times cited: 24 -
Blood Profiles of Gut Bacterial Tacrolimus Metabolite in Kidney Transplant Recipients.
Transplantation direct.
2020
Academic Article
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Times cited: 2 -
Kidney allograft recipients, immunosuppression, and coronavirus disease-2019: a report of consecutive cases from a New York City transplant center.
Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.
2020
Academic Article
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Times cited: 60 -
Urinary cell transcriptomics and acute rejection in human kidney allografts.
JCI insight.
2020
Academic Article
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Times cited: 19 -
Separating the signal from the noise in metagenomic cell-free DNA sequencing.
Microbiome.
2020
Academic Article
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Times cited: 23 - Avoiding infections in transplant recipients: does the gut microbiota have a key role?. Expert review of clinical immunology. 2020 Editorial Article GET IT
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Gut uropathogen abundance is a risk factor for development of bacteriuria and urinary tract infection.
Nature communications.
2019
Academic Article
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Times cited: 92 -
Gastrointestinal pathogen colonization and the microbiome in asymptomatic kidney transplant recipients.
Transplant infectious disease : an official journal of the Transplantation Society.
2019
Academic Article
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Times cited: 10 -
Butyrate-producing gut bacteria and viral infections in kidney transplant recipients: A pilot study.
Transplant infectious disease : an official journal of the Transplantation Society.
2019
Academic Article
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Times cited: 28 -
A cell-free DNA metagenomic sequencing assay that integrates the host injury response to infection.
Proceedings of the National Academy of Sciences of the United States of America.
2019
Academic Article
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Times cited: 38 -
Identification of Antibiotic Administration as a Potentially Novel Factor Associated With Tacrolimus Trough Variability in Kidney Transplant Recipients: A Preliminary Study.
Transplantation direct.
2019
Academic Article
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Times cited: 8 -
Landscape of innate immune system transcriptome and acute T cell-mediated rejection of human kidney allografts.
JCI insight.
2019
Academic Article
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Times cited: 22 -
Commensal Gut Bacteria Convert the Immunosuppressant Tacrolimus to Less Potent Metabolites.
Drug metabolism and disposition: the biological fate of chemicals.
2018
Academic Article
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Times cited: 66 -
Gut microbiota dysbiosis and diarrhea in kidney transplant recipients.
American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.
2018
Academic Article
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Times cited: 51 -
Urinary cell-free DNA is a versatile analyte for monitoring infections of the urinary tract.
Nature communications.
2018
Academic Article
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Times cited: 100 -
Single nucleotide variant counts computed from RNA sequencing and cellular traffic into human kidney allografts.
American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.
2018
Academic Article
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Times cited: 9 -
Urine biomarkers informative of human kidney allograft rejection and tolerance.
Human immunology.
2018
Review
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Times cited: 16 -
Kidney allograft failure in the steroid-free immunosuppression era: A matched case-control study.
Clinical transplantation.
2017
Academic Article
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Times cited: 9 -
Exome Sequencing and Prediction of Long-Term Kidney Allograft Function.
PLoS computational biology.
2016
Academic Article
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Times cited: 7131 -
Routine prophylaxis with proton pump inhibitors and post-transplant complications in kidney transplant recipients undergoing early corticosteroid withdrawal.
Clinical transplantation.
2016
Academic Article
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Times cited: 13 -
Development and validation of a prognostic index for allograft outcome in kidney recipients with transplant glomerulopathy.
Kidney international.
2016
Academic Article
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Times cited: 25 -
Epidemiology and outcomes of carbapenem-resistant Klebsiella pneumoniae bacteriuria in kidney transplant recipients.
Transplant infectious disease : an official journal of the Transplantation Society.
2015
Academic Article
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Times cited: 62 -
Urine Metabolite Profiles Predictive of Human Kidney Allograft Status.
Journal of the American Society of Nephrology : JASN.
2015
Academic Article
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Times cited: 49 -
Characteristics of Circulating Donor Human Leukocyte Antigen-specific Immunoglobulin G Antibodies Predictive of Acute Antibody-mediated Rejection and Kidney Allograft Failure.
Transplantation.
2015
Academic Article
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Times cited: 46 -
Gut microbiota and tacrolimus dosing in kidney transplantation.
PloS one.
2015
Academic Article
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Times cited: 119 -
Gut microbial community structure and complications after kidney transplantation: a pilot study.
Transplantation.
2014
Academic Article
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Times cited: 122 -
Circulating levels of 25-hydroxyvitamin D and acute cellular rejection in kidney allograft recipients.
Transplantation.
2014
Academic Article
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Times cited: 44 -
Allograft rejection and tubulointerstitial fibrosis in human kidney allografts: interrogation by urinary cell mRNA profiling.
Transplantation reviews (Orlando, Fla.).
2014
Review
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Times cited: 8 -
Urinary cell mRNA profiles and differential diagnosis of acute kidney graft dysfunction.
Journal of the American Society of Nephrology : JASN.
2014
Academic Article
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Times cited: 36 -
Urinary cell mRNA profiles predictive of human kidney allograft status.
Immunological reviews.
2014
Review
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Times cited: 35 -
Independent risk factors for urinary tract infection and for subsequent bacteremia or acute cellular rejection: a single-center report of 1166 kidney allograft recipients.
Transplantation.
2013
Academic Article
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Times cited: 109 -
Noninvasive prognostication of polyomavirus BK virus-associated nephropathy.
Transplantation.
2013
Academic Article
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Times cited: 21 -
HIV-infected kidney graft recipients managed with an early corticosteroid withdrawal protocol: clinical outcomes and messenger RNA profiles.
Transplantation.
2013
Academic Article
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Times cited: 11