Pathak, Jyotishman

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AD-BERT: Using Pre-trained Language Model to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease. Journal of biomedical informatics. 2023 Academic Article GET IT
Women's perspectives on the use of artificial intelligence (AI)-based technologies in mental healthcare. JAMIA open. 2023 Academic Article GET IT
Risk stratification models for predicting preventable hospitalization in commercially insured late middle-aged adults with depression. BMC health services research. 2023 Academic Article GET IT
Comparing the effects of four common drug classes on the progression of mild cognitive impairment to dementia using electronic health records. Scientific reports. 2023 Academic Article GET IT
Multi-ancestry genome- and phenome-wide association studies of diverticular disease in electronic health records with natural language processing enriched phenotyping algorithm. PloS one. 2023 Academic Article GET IT
A multisite comparison using electronic health records and natural language processing to identify the association between suicidality and hospital readmission amongst patients with eating disorders. The International journal of eating disorders. 2023 Academic Article GET IT
An NLP approach to identify SDoH-related circumstance and suicide crisis from death investigation narratives. Journal of the American Medical Informatics Association : JAMIA. 2023 Academic Article GET IT
Effects of social deprivation on risk factors for suicidal ideation and suicide attempts in commercially insured US youth and adults. Scientific reports. 2023 Academic Article GET IT
Characterizing variability of electronic health record-driven phenotype definitions. Journal of the American Medical Informatics Association : JAMIA. 2023 Academic Article GET IT
Times cited: 2
Prediction of left ventricular ejection fraction changes in heart failure patients using machine learning and electronic health records: a multi-site study. Scientific reports. 2023 Academic Article GET IT
Times cited: 1
Comorbidity and healthcare utilization in patients with treatment resistant depression: A large-scale retrospective cohort analysis using electronic health records. Journal of affective disorders. 2022 Academic Article GET IT
Trends in psychiatric diagnoses by COVID-19 infection and hospitalization among patients with and without recent clinical psychiatric diagnoses in New York city from March 2020 to August 2021. Translational psychiatry. 2022 Academic Article GET IT
Times cited: 2
Risk of suicide attempts and self-harm after 1.4 million general medical hospitalizations of men with mental illness. Journal of psychiatric research. 2022 Academic Article GET IT
Portability of natural language processing methods to detect suicidality from clinical text in US and UK electronic health records. Journal of affective disorders reports. 2022 Academic Article GET IT
Times cited: 1
Social connectedness as a determinant of mental health: A scoping review. PloS one. 2022 Review GET IT
Times cited: 5
Predictive Modeling for Suicide-Related Outcomes and Risk Factors among Patients with Pain Conditions: A Systematic Review. Journal of clinical medicine. 2022 Review GET IT
Times cited: 1336
Design and validation of a FHIR-based EHR-driven phenotyping toolbox. Journal of the American Medical Informatics Association : JAMIA. 2022 Academic Article GET IT
Times cited: 2
Faces Scales for Anxiety and Anger: A National Study of Measurement Properties. The Journal of clinical psychiatry. 2022 Academic Article GET IT
Electronic health records and blockchain interoperability requirements: a scoping review. JAMIA open. 2022 Review GET IT
Times cited: 35
Association of Social Determinants of Health and Vaccinations With Child Mental Health During the COVID-19 Pandemic in the US. JAMA psychiatry. 2022 Academic Article GET IT
Times cited: 14
Systematic review of current natural language processing methods and applications in cardiology. Heart (British Cardiac Society). 2022 Review GET IT
Times cited: 13
Use of Acute Mental Health Care in U.S. Children's Hospitals Before and After Statewide COVID-19 School Closure Orders. Psychiatric services (Washington, D.C.). 2022 Academic Article GET IT
Times cited: 3
An architecture for research computing in health to support clinical and translational investigators with electronic patient data. Journal of the American Medical Informatics Association : JAMIA. 2022 Academic Article GET IT
Times cited: 3
Mental Health-Related Emergency Department Visits Among Children During The Early COVID-19 Pandemic. Psychiatric research and clinical practice. 2022 Academic Article GET IT
Times cited: 15
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2022 Academic Article GET IT
Times cited: 1
Deep significance clustering: a novel approach for identifying risk-stratified and predictive patient subgroups. Journal of the American Medical Informatics Association : JAMIA. 2021 Academic Article GET IT
Times cited: 3
Extracting social determinants of health from electronic health records using natural language processing: a systematic review. Journal of the American Medical Informatics Association : JAMIA. 2021 Academic Article GET IT
Times cited: 26
The importance of social activity to risk of major depression in older adults. Psychological medicine. 2021 Academic Article GET IT
Times cited: 30
Estimation of postpartum depression risk from electronic health records using machine learning. BMC pregnancy and childbirth. 2021 Academic Article GET IT
Times cited: 12
Identifying urban built environment factors in pregnancy care and maternal mental health outcomes. BMC pregnancy and childbirth. 2021 Academic Article GET IT
Times cited: 2
CQL4NLP: Development and Integration of FHIR NLP Extensions in Clinical Quality Language for EHR-driven Phenotyping. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2021 Academic Article GET IT
Times cited: 7
Characterization of time-variant and time-invariant assessment of suicidality on Reddit using C-SSRS. PloS one. 2021 Academic Article GET IT
Times cited: 12
Comparing Suicide Risk Insights derived from Clinical and Social Media data. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2021 Academic Article GET IT
Integration of NLP2FHIR Representation with Deep Learning Models for EHR Phenotyping: A Pilot Study on Obesity Datasets. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2021 Academic Article GET IT
Times cited: 2
Association of co-occurring opioid or other substance use disorders with increased healthcare utilization in patients with depression. Translational psychiatry. 2021 Academic Article GET IT
Times cited: 5
Using weak supervision and deep learning to classify clinical notes for identification of current suicidal ideation. Journal of psychiatric research. 2021 Academic Article GET IT
Times cited: 18
Machine Learning to Differentiate Risk of Suicide Attempt and Self-harm After General Medical Hospitalization of Women With Mental Illness. Medical care. 2021 Academic Article GET IT
Times cited: 11
Evaluating Commercially Available Mobile Apps for Depression Self-Management. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2021 Academic Article GET IT
Times cited: 6
Bi-directional association between depression and HF: An electronic health records-based cohort study. Journal of comorbidity. 2020 Academic Article GET IT
Correlates of Mental Health Symptoms Among US Adults During COVID-19, March-April 2020. Public health reports (Washington, D.C. : 1974). 2020 Academic Article GET IT
Times cited: 21
Using electronic health records for population health sciences: a case study to evaluate the associations between changes in left ventricular ejection fraction and the built environment. JAMIA open. 2020 Academic Article GET IT
Healthcare utilization patterns among persons who use drugs during the COVID-19 pandemic. Journal of substance abuse treatment. 2020 Academic Article GET IT
Times cited: 17
Healthcare utilization among patients with psychiatric hospitalization admitted through the emergency department (ED): A claims-based study. General hospital psychiatry. 2020 Academic Article GET IT
Times cited: 2
Development and validation of a machine learning algorithm for predicting the risk of postpartum depression among pregnant women. Journal of affective disorders. 2020 Academic Article GET IT
Times cited: 36
Dissecting clinical heterogeneity of bipolar disorder using multiple polygenic risk scores. Translational psychiatry. 2020 Academic Article GET IT
Times cited: 18
Data-driven discovery of probable Alzheimer's disease and related dementia subphenotypes using electronic health records. Learning health systems. 2020 Academic Article GET IT
Times cited: 6
Subphenotyping depression using machine learning and electronic health records. Learning health systems. 2020 Academic Article GET IT
Times cited: 32
Performance of Electronic Health Record Diagnosis Codes for Ambulatory Heart Failure Encounters. Journal of cardiac failure. 2020 Academic Article GET IT
Times cited: 2
Toward cross-platform electronic health record-driven phenotyping using Clinical Quality Language. Learning health systems. 2020 Academic Article GET IT
Times cited: 9
Deep learning in mental health outcome research: a scoping review. Translational psychiatry. 2020 Review GET IT
Times cited: 92
Multimodal mental health analysis in social media. PloS one. 2020 Academic Article GET IT
Times cited: 45
Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2020 Academic Article GET IT
Times cited: 7
Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2020 Academic Article GET IT
Times cited: 9
Personal Life Events-A Promising Dimension for Psychiatry in Electronic Health Records. JAMA psychiatry. 2020 Academic Article GET IT
Times cited: 12
Identifying sub-phenotypes of acute kidney injury using structured and unstructured electronic health record data with memory networks. Journal of biomedical informatics. 2020 Academic Article GET IT
Times cited: 32
Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries. Journal of biomedical informatics. 2019 Academic Article GET IT
Times cited: 26
Stratified Mortality Prediction of Patients with Acute Kidney Injury in Critical Care. Studies in health technology and informatics. 2019 Academic Article GET IT
Times cited: 14
Using Electronic Health Records and Machine Learning to Predict Postpartum Depression. Studies in health technology and informatics. 2019 Academic Article GET IT
Times cited: 43
Social determinants of health in mental health care and research: a case for greater inclusion. Journal of the American Medical Informatics Association : JAMIA. 2019 Academic Article GET IT
Times cited: 13
Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation. Journal of the American Medical Informatics Association : JAMIA. 2019 Academic Article GET IT
Times cited: 29
Drug knowledge bases and their applications in biomedical informatics research. Briefings in bioinformatics. 2019 Review GET IT
Times cited: 23
A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids. Frontiers in genetics. 2019 Academic Article GET IT
Times cited: 989
Predictive Modeling of the Risk of Acute Kidney Injury in Critical Care: A Systematic Investigation of The Class Imbalance Problem. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2019 Academic Article GET IT
Developing a portable natural language processing based phenotyping system. BMC medical informatics and decision making. 2019 Academic Article GET IT
Times cited: 23
Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2018 Academic Article GET IT
Times cited: 11
A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments. Journal of the American Medical Informatics Association : JAMIA. 2018 Academic Article GET IT
Times cited: 19
Association networks in a matched case-control design - Co-occurrence patterns of preexisting chronic medical conditions in patients with major depression versus their matched controls. Journal of biomedical informatics. 2018 Academic Article GET IT
Times cited: 7
Using electronic health records to characterize prescription patterns: focus on antidepressants in nonpsychiatric outpatient settings. JAMIA open. 2018 Academic Article GET IT
Times cited: 9
The Role of Next-Generation Sequencing in Precision Medicine: A Review of Outcomes in Oncology. Journal of personalized medicine. 2018 Review GET IT
Times cited: 64
The potential value of social determinants of health in predicting health outcomes. Journal of the American Medical Informatics Association : JAMIA. 2018 Letter GET IT
Times cited: 6
CATCH-KB: Establishing a Pharmacogenomics Variant Repository for Chemotherapy-Induced Cardiotoxicity. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2018 Academic Article GET IT
From Sour Grapes to Low-Hanging Fruit: A Case Study Demonstrating a Practical Strategy for Natural Language Processing Portability. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2018 Academic Article GET IT
Times cited: 3476
A Framework for Data Quality Assessment in Clinical Research Datasets. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2018 Academic Article GET IT
Times cited: 24
Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2018 Academic Article GET IT
Times cited: 36
Understanding the research landscape of major depressive disorder via literature mining: an entity-level analysis of PubMed data from 1948 to 2017. JAMIA open. 2018 Academic Article GET IT
Times cited: 4
Risk Factors for Depression Among Civilians After the 9/11 World Trade Center Terrorist Attacks: A Systematic Review and Meta-Analysis. PLoS currents. 2018 Academic Article GET IT
Electronic Health Record Phenotypes for Precision Medicine: Perspectives and Caveats From Treatment of Breast Cancer at a Single Institution. Clinical and translational science. 2018 Academic Article GET IT
Times cited: 13
Prototype Development: Context-Driven Dynamic XML Ophthalmologic Data Capture Application. JMIR medical informatics. 2017 Academic Article GET IT
Times cited: 407
Semi-Supervised Approach to Monitoring Clinical Depressive Symptoms in Social Media. Proceedings of the ... IEEE/ACM International Conference on Advances in Social Network Analysis and Mining. International Conference on Advances in Social Network Analysis and Mining. 2017 Academic Article GET IT
Times cited: 92
D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2017 Academic Article GET IT
Automated Diabetes Case Identification Using Electronic Health Record Data at a Tertiary Care Facility. Mayo Clinic proceedings. Innovations, quality & outcomes. 2017 Academic Article GET IT
Measuring the impact of ambulatory red blood cell transfusion on home functional status: study protocol for a pilot randomized controlled trial. Trials. 2017 Academic Article GET IT
Times cited: 4
Genome-wide study of resistant hypertension identified from electronic health records. PloS one. 2017 Academic Article GET IT
Times cited: 28
Identification of unique venous thromboembolism-susceptibility variants in African-Americans. Thrombosis and haemostasis. 2017 Academic Article GET IT
Times cited: 20
Time to achieving therapeutic international normalized ratio increases hospital length of stay after heart valve replacement surgery. American heart journal. 2017 Academic Article GET IT
Times cited: 7
Increased risk of hospitalization for ultrarapid metabolizers of cytochrome P450 2D6. Pharmacogenomics and personalized medicine. 2017 Academic Article GET IT
Times cited: 16
Improving risk prediction for depression via Elastic Net regression - Results from Korea National Health Insurance Services Data. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2017 Academic Article GET IT
Times cited: 8
Predicting Prolonged Stay in the ICU Attributable to Bleeding in Patients Offered Plasma Transfusion. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2017 Academic Article GET IT
Times cited: 3
Standardized Representation of Clinical Study Data Dictionaries with CIMI Archetypes. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2017 Academic Article GET IT
Times cited: 5
Developing a modular architecture for creation of rule-based clinical diagnostic criteria. BioData mining. 2016 Academic Article GET IT
Times cited: 6
Practical considerations for implementing genomic information resources. Experiences from eMERGE and CSER. Applied clinical informatics. 2016 Academic Article GET IT
Times cited: 19
Minimum information required for a DMET experiment reporting. Pharmacogenomics. 2016 Academic Article GET IT
Times cited: 4
Leveraging electronic health records to study pleiotropic effects on bipolar disorder and medical comorbidities. Translational psychiatry. 2016 Academic Article GET IT
Times cited: 5
A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2016 Academic Article GET IT
Times cited: 108
Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution. Journal of biomedical informatics. 2016 Academic Article GET IT
Times cited: 8
Clinical phenotyping in selected national networks: demonstrating the need for high-throughput, portable, and computational methods. Artificial intelligence in medicine. 2016 Academic Article GET IT
Times cited: 62
Quantifying the impact of chronic conditions on a diagnosis of major depressive disorder in adults: a cohort study using linked electronic medical records. BMC psychiatry. 2016 Academic Article GET IT
Times cited: 28
PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. Journal of the American Medical Informatics Association : JAMIA. 2016 Academic Article GET IT
Times cited: 186
Improvement in Cardiovascular Risk Prediction with Electronic Health Records. Journal of cardiovascular translational research. 2016 Academic Article GET IT
Times cited: 27
The phenotypic legacy of admixture between modern humans and Neandertals. Science (New York, N.Y.). 2016 Academic Article GET IT
Times cited: 181
Developing EHR-driven heart failure risk prediction models using CPXR(Log) with the probabilistic loss function. Journal of biomedical informatics. 2016 Academic Article GET IT
Times cited: 57
Practical considerations in genomic decision support: The eMERGE experience. Journal of pathology informatics. 2015 Academic Article GET IT
Desiderata for computable representations of electronic health records-driven phenotype algorithms. Journal of the American Medical Informatics Association : JAMIA. 2015 Academic Article GET IT
Times cited: 79
A conceptual model for translating omic data into clinical action. Journal of pathology informatics. 2015 Academic Article GET IT
Health behaviors and quality of life predictors for risk of hospitalization in an electronic health record-linked biobank. International journal of general medicine. 2015 Academic Article GET IT
Times cited: 10
Ensemble learning approaches to predicting complications of blood transfusion. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference. 2015 Academic Article GET IT
Times cited: 13
ePhenotyping for Abdominal Aortic Aneurysm in the Electronic Medical Records and Genomics (eMERGE) Network: Algorithm Development and Konstanz Information Miner Workflow. International journal of biomedical data mining. 2015 Academic Article GET IT
Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research. Journal of the American Medical Informatics Association : JAMIA. 2015 Review GET IT
Times cited: 25
Approaching patient engagement in research: what do patients with cardiovascular disease think?. Patient preference and adherence. 2015 Academic Article GET IT
Times cited: 6
A Robust e-Epidemiology Tool in Phenotyping Heart Failure with Differentiation for Preserved and Reduced Ejection Fraction: the Electronic Medical Records and Genomics (eMERGE) Network. Journal of cardiovascular translational research. 2015 Academic Article GET IT
Times cited: 30
Quantifying the importance of disease burden on perceived general health and depressive symptoms in patients within the Mayo Clinic Biobank. Health and quality of life outcomes. 2015 Academic Article GET IT
Times cited: 11
A Modular Architecture for Electronic Health Record-Driven Phenotyping. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2015 Academic Article GET IT
A Prototype for Executable and Portable Electronic Clinical Quality Measures Using the KNIME Analytics Platform. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2015 Academic Article GET IT
Studying the Confounding Effects of Socio-Ecological Conditions in Retrospective Clinical Research: A Use Case of Social Stress. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2015 Academic Article GET IT
Leveraging an Electronic Health Record-Linked Biorepository to Generate a Metformin Pharmacogenomics Hypothesis. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2015 Academic Article GET IT
A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL. Studies in health technology and informatics. 2015 Academic Article GET IT
A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. Studies in health technology and informatics. 2015 Academic Article GET IT
Times cited: 6
Characterizing the epidemiology of perioperative transfusion-associated circulatory overload. Anesthesiology. 2015 Academic Article GET IT
Times cited: 92
Characterizing the epidemiology of postoperative transfusion-related acute lung injury. Anesthesiology. 2015 Academic Article GET IT
Times cited: 81
Clinical Decision Support to Implement CYP2D6 Drug-Gene Interaction. Studies in health technology and informatics. 2015 Academic Article GET IT
Times cited: 4
Developing a Standards-Based Information Model for Representing Computable Diagnostic Criteria: A Feasibility Study of the NQF Quality Data Model. Studies in health technology and informatics. 2015 Academic Article GET IT
Times cited: 3
Effects of Plasma Transfusion on Perioperative Bleeding Complications: A Machine Learning Approach. Studies in health technology and informatics. 2015 Academic Article GET IT
Times cited: 6
Using EHR-Linked Biobank Data to Study Metformin Pharmacogenomics. Studies in health technology and informatics. 2015 Academic Article GET IT
Times cited: 4
Using EHRs and Machine Learning for Heart Failure Survival Analysis. Studies in health technology and informatics. 2015 Academic Article GET IT
Times cited: 72
Using EHRs for Heart Failure Therapy Recommendation Using Multidimensional Patient Similarity Analytics. Studies in health technology and informatics. 2015 Academic Article GET IT
Times cited: 35
Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network. PloS one. 2014 Academic Article GET IT
Times cited: 28
Analysis of online information searching for cardiovascular diseases on a consumer health information portal. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2014 Academic Article GET IT
Times cited: 4
Scalable and High-Throughput Execution of Clinical Quality Measures from Electronic Health Records using MapReduce and the JBoss® Drools Engine. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2014 Academic Article GET IT
Times cited: 4
Evaluating the process of online health information searching: a qualitative approach to exploring consumer perspectives. Journal of medical Internet research. 2014 Academic Article GET IT
Times cited: 108
Empowering Personalized Medicine with Big Data and Semantic Web Technology: Promises, Challenges, and Use Cases. Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data. 2014 Academic Article GET IT
Times cited: 65
Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci. Molecular vision. 2014 Academic Article GET IT
Times cited: 26
Phenome-wide association studies demonstrating pleiotropy of genetic variants within FTO with and without adjustment for body mass index. Frontiers in genetics. 2014 Academic Article GET IT
Times cited: 30
Comparative analysis of online health queries originating from personal computers and smart devices on a consumer health information portal. Journal of medical Internet research. 2014 Academic Article GET IT
Times cited: 27
The ATXN2-SH2B3 locus is associated with peripheral arterial disease: an electronic medical record-based genome-wide association study. Frontiers in genetics. 2014 Academic Article GET IT
Times cited: 134
Design and anticipated outcomes of the eMERGE-PGx project: a multicenter pilot for preemptive pharmacogenomics in electronic health record systems. Clinical pharmacology and therapeutics. 2014 Academic Article GET IT
Times cited: 172
Design patterns for the development of electronic health record-driven phenotype extraction algorithms. Journal of biomedical informatics. 2014 Academic Article GET IT
Times cited: 37
An electronic health record driven algorithm to identify incident antidepressant medication users. Journal of the American Medical Informatics Association : JAMIA. 2014 Academic Article GET IT
Times cited: 6
Detecting Associations between Major Depressive Disorder Treatment and Essential Hypertension using Electronic Health Records. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2014 Academic Article GET IT
Simplifying complex clinical element models to encourage adoption. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2014 Academic Article GET IT
Variation in Cohorts Derived from EHR Data in Four Care Delivery Settings. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2014 Academic Article GET IT
Biobanks and personalized medicine. Clinical genetics. 2014 Review GET IT
Times cited: 59
Online information seeking for cardiovascular diseases: a case study from Mayo Clinic. Studies in health technology and informatics. 2014 Academic Article GET IT
Times cited: 3
Preemptive genotyping for personalized medicine: design of the right drug, right dose, right time-using genomic data to individualize treatment protocol. Mayo Clinic proceedings. 2014 Academic Article GET IT
Times cited: 220
Electronic health records-driven phenotyping: challenges, recent advances, and perspectives. Journal of the American Medical Informatics Association : JAMIA. 2013 Editorial Article GET IT
Times cited: 158
Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data. Nature biotechnology. 2013 Academic Article GET IT
Times cited: 572
Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium. Journal of the American Medical Informatics Association : JAMIA. 2013 Academic Article GET IT
Times cited: 78
Some experiences and opportunities for big data in translational research. Genetics in medicine : official journal of the American College of Medical Genetics. 2013 Review GET IT
Times cited: 62
Hospitalizations and emergency department use in Mayo Clinic Biobank participants within the employee and community health medical home. Mayo Clinic proceedings. 2013 Academic Article GET IT
Times cited: 10
The Mayo Clinic Biobank: a building block for individualized medicine. Mayo Clinic proceedings. 2013 Academic Article GET IT
Times cited: 157
Use of computerized algorithm to identify individuals in need of testing for celiac disease. Journal of the American Medical Informatics Association : JAMIA. 2013 Academic Article GET IT
Times cited: 22
A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury. Journal of the American Medical Informatics Association : JAMIA. 2013 Academic Article GET IT
Times cited: 44
Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL. Journal of biomedical informatics. 2013 Academic Article GET IT
Times cited: 11
Bias in recording of body mass index data in the electronic health record. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2013 Academic Article GET IT
Mining Genotype-Phenotype Associations from Public Knowledge Sources via Semantic Web Querying. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2013 Academic Article GET IT
PharmGKB Drug Data Normalization with NDF-RT. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2013 Academic Article GET IT
Using association rule mining for phenotype extraction from electronic health records. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2013 Academic Article GET IT
Using clinical element models for pharmacogenomic study data standardization. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2013 Academic Article GET IT
Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk. Circulation. 2013 Academic Article GET IT
Times cited: 140
Incorporating expert terminology and disease risk factors into consumer health vocabularies. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2013 Academic Article GET IT
Times cited: 13
Using linked data for mining drug-drug interactions in electronic health records. Studies in health technology and informatics. 2013 Academic Article GET IT
Times cited: 25
A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. Journal of the American Medical Informatics Association : JAMIA. 2012 Academic Article GET IT
Times cited: 43
Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank. Journal of biomedical semantics. 2012 Academic Article GET IT
Times cited: 104
Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: a case study. Journal of biomedical informatics. 2012 Academic Article GET IT
Times cited: 6
An evaluation of the NQF Quality Data Model for representing Electronic Health Record driven phenotyping algorithms. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2012 Academic Article GET IT
Times cited: 26
Mining the human phenome using semantic web technologies: a case study for Type 2 Diabetes. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2012 Academic Article GET IT
Times cited: 11
Modeling and executing electronic health records driven phenotyping algorithms using the NQF Quality Data Model and JBoss® Drools Engine. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2012 Academic Article GET IT
Times cited: 30
Terminology representation guidelines for biomedical ontologies in the semantic web notations. Journal of biomedical informatics. 2012 Academic Article GET IT
Times cited: 13
Electronic health record surveillance algorithms facilitate the detection of transfusion-related pulmonary complications. Transfusion. 2012 Academic Article GET IT
Times cited: 32
Using semantic web technologies for cohort identification from electronic health records for clinical research. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2012 Academic Article GET IT
Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: the SHARPn project. Journal of biomedical informatics. 2012 Academic Article GET IT
Times cited: 140
Importance of multi-modal approaches to effectively identify cataract cases from electronic health records. Journal of the American Medical Informatics Association : JAMIA. 2012 Academic Article GET IT
Times cited: 92
Integrating VA's NDF-RT drug terminology with PharmGKB: preliminary results. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2012 Academic Article GET IT
Times cited: 3
Validation and discovery of genotype-phenotype associations in chronic diseases using linked data. Studies in health technology and informatics. 2012 Academic Article GET IT
Times cited: 1
An OWL meta-ontology for representing the Clinical Element Model. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2011 Academic Article GET IT
Times cited: 11
Analyzing the heterogeneity and complexity of Electronic Health Record oriented phenotyping algorithms. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2011 Academic Article GET IT
Times cited: 67
The SHARPn project on secondary use of Electronic Medical Record data: progress, plans, and possibilities. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2011 Academic Article GET IT
Times cited: 35
Using RxNorm and NDF-RT to classify medication data extracted from electronic health records: experiences from the Rochester Epidemiology Project. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2011 Academic Article GET IT
Times cited: 25
Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies. American journal of human genetics. 2011 Academic Article GET IT
Times cited: 197
Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels. Mayo Clinic proceedings. 2011 Academic Article GET IT
Times cited: 52
Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience. Journal of the American Medical Informatics Association : JAMIA. 2011 Academic Article GET IT
Times cited: 85
Electronic medical records for genetic research: results of the eMERGE consortium. Science translational medicine. 2011 Academic Article GET IT
Times cited: 237
Further revamping VA's NDF-RT drug terminology for clinical research. Journal of the American Medical Informatics Association : JAMIA. 2011 Letter GET IT
Times cited: 8
Evaluating Phenotypic Data Elements for Genetics and Epidemiological Research: Experiences from the eMERGE and PhenX Network Projects. AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2011 Academic Article GET IT
Use of standard drug vocabularies in clinical research: a case study in pediatrics. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2010 Academic Article GET IT
Times cited: 6
Analyzing categorical information in two publicly available drug terminologies: RxNorm and NDF-RT. Journal of the American Medical Informatics Association : JAMIA. 2010 Academic Article GET IT
Times cited: 30
Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG. 2010 GET IT
Times cited: 2
Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. Journal of the American Medical Informatics Association : JAMIA. 2010 Academic Article GET IT
Times cited: 100
LexRDF Model: An RDF-based Unified Model for Heterogeneous Biomedical Ontologies. CEUR workshop proceedings. 2009 Academic Article GET IT
Survey of modular ontology techniques and their applications in the biomedical domain. Integrated computer-aided engineering. 2009 Academic Article GET IT
Times cited: 72
LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime. Journal of the American Medical Informatics Association : JAMIA. 2009 Academic Article GET IT
Times cited: 28
Formalizing ICD coding rules using Formal Concept Analysis. Journal of biomedical informatics. 2009 Academic Article GET IT
Times cited: 23
LexValueSets: an approach for context-driven value sets extraction. AMIA ... Annual Symposium proceedings. AMIA Symposium. 2008 Academic Article GET IT
Times cited: 4
Adopting Graph Traversal Techniques for Context-Driven Value Sets Extraction from Biomedical Knowledge Sources. Proceedings. IEEE International Conference on Semantic Computing. 2008 Academic Article GET IT
Times cited: 2
Modular Ontology Techniques and their Applications in the Biomedical Domain. Proceedings of the ... IEEE International Conference on Information Reuse and Integration. IEEE International Conference on Information Reuse and Integration. 2008 Academic Article GET IT
Times cited: 5
Information Integration from Semantically Heterogeneous Biological Data Sources. International Workshop on Databases and Expert Systems Applications : proceedings. 2005 Academic Article GET IT
Times cited: 6

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Funding awarded

Linking VA and non-VA data to study the risk of suicide in chronic pain patients. awarded by National Institute of Mental Health Principal Investigator 2020 - 2025
4/4: Leveraging EHR-linked biobanks for deep phenotyping, polygenic risk score modeling, and outcomes analysis in psychiatric disorders awarded by National Institute of Mental Health Principal Investigator 2019 - 2024
Predicting Self-Harm, Suicide Attempt, and Suicidal Death using Longitudinal EHR, Claims and Mortality Data awarded by National Institute of Mental Health Principal Investigator 2019 - 2024

An Intersectoral Approach to Study Built Environment Factors Affecting Postpartum Depression and Children''s Health awarded by National Institute of General Medical Sciences Co-Investigator 2019 - 2023
New York City Consortium for Precision Medicine (All of Us Research Program at WCM) awarded by National Institute of Environmental Health Sciences Co-Investigator 2018 - 2023
ALACRITY for Late- and Mid-Life Mood Disorders awarded by National Institute of Mental Health Co-Investigator 2017 - 2023

PASC EHR/ORWD Phase II Proposal (RECOVER) awarded by National Heart, Lung, & Blood Institute Key Personnel 2021 - 2023

Mental Health Research Network: Embedded Research in Learning Health Systems awarded by National Cancer Institute Principal Investigator Subaward 2019 - 2024
Bioethical Considerations for Building, Evaluating, and Implementing Artificial Intelligence in Perinatal Mood and Anxiety Disorders awarded by National Institute of Mental Health Principal Investigator Subaward 2022 - 2023
Risk Modeling And Shared Decision Making For Postpartum Depression awarded by National Institute of Mental Health Principal Investigator Subaward 2021 - 2023

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Background

education and training

Ph.D., Iowa State University 2007
B.Eng., National Institute of Technology, Jamshedpur (India) 2002

Contact

full name

Jyotishman Pathak

primary email

jyp2001@med.cornell.edu

VIVO Weill Cornell Medical College

Jyotishman Pathak Professor of Population Health Sciences

Publications

selected publications

Research

Funding awarded

Background

education and training

Contact

full name

primary email

Phone

Publications

selected publications

Research

Funding awarded

Background

education and training

Contact

full name

primary email