selected publications
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maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics (Oxford, England).
2022
Academic Article
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Times cited: 8 - CD23 Levels on B Cells Determine Long-Term Therapeutic Response in Patients with Atopic Eczema Treated with Selective IgE Immune Apheresis. The Journal of investigative dermatology. 2020 Letter GET IT
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De Novo Pathway-Based Classification of Breast Cancer Subtypes.
Methods in molecular biology (Clifton, N.J.).
2020
Academic Article
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Times cited: 2 -
Maternal whole blood cell miRNA-340 is elevated in gestational diabetes and inversely regulated by glucose and insulin.
Scientific reports.
2018
Academic Article
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Times cited: 34 -
De novo pathway-based biomarker identification.
Nucleic acids research.
2017
Academic Article
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Times cited: 34 -
Elucidation of Altered Pathways in Tumor-Initiating Cells of Triple-Negative Breast Cancer: A Useful Cell Model System for Drug Screening.
Stem cells (Dayton, Ohio).
2017
Academic Article
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Times cited: 10 -
On the performance of de novo pathway enrichment.
NPJ systems biology and applications.
2017
Academic Article
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Times cited: 130 -
Cytokine profiling of tumor interstitial fluid of the breast and its relationship with lymphocyte infiltration and clinicopathological characteristics.
Oncoimmunology.
2016
Academic Article
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Times cited: 392 -
Large-scale tracking and classification for automatic analysis of cell migration and proliferation, and experimental optimization of high-throughput screens of neuroblastoma cells.
Cytometry. Part A : the journal of the International Society for Analytical Cytology.
2015
Academic Article
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Times cited: 13 -
5-azacytidine inhibits nonsense-mediated decay in a MYC-dependent fashion.
EMBO molecular medicine.
2014
Academic Article
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Times cited: 45 -
Elucidation of epithelial-mesenchymal transition-related pathways in a triple-negative breast cancer cell line model by multi-omics interactome analysis.
Integrative biology : quantitative biosciences from nano to macro.
2014
Academic Article
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Times cited: 13 -
KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape.
BMC systems biology.
2014
Academic Article
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Times cited: 51 -
Classification of breast cancer subtypes by combining gene expression and DNA methylation data.
Journal of integrative bioinformatics.
2014
Academic Article
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Times cited: 39 -
Time-lapse imaging of neuroblastoma cells to determine cell fate upon gene knockdown.
PloS one.
2012
Academic Article
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Times cited: 12 -
MYCN-mediated overexpression of mitotic spindle regulatory genes and loss of p53-p21 function jointly support the survival of tetraploid neuroblastoma cells.
Cancer letters.
2012
Academic Article
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Times cited: 14